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cooler-mcp
A Model Context Protocol (MCP) server that exposes Cooler (open2c/cooler — Hi-C contact matrix toolkit) for use with Claude or any MCP-compatible client.
bwa-mcp
A Model Context Protocol (MCP) server that exposes BWA (Burrows-Wheeler Aligner) tools for use with Claude or any MCP-compatible client.
gzip-mcp
A Model Context Protocol (MCP) server that exposes gzip for use with Claude or any MCP-compatible client.
pairix-mcp
An MCP server for pairix — a fast indexer and query tool for bgzipped .pairs files used in Hi-C data analysis.
pairtools-mcp
A Model Context Protocol (MCP) server that exposes pairtools tools for use with Claude or any MCP-compatible client.
samtools-mcp
A Model Context Protocol (MCP) server that exposes samtools (SAM/BAM/CRAM processing toolkit) for use with Claude or any MCP-compatible client.