AIBioAgentTools

The Open Registry for
Bioinformatics MCP Tools

Discover, publish and connect AI agents with bioinformatics software — from sequence alignment to variant calling.

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What is AIBioAgentTools?

A community registry that makes it easy to find and share Model Context Protocol tools for bioinformatics — all in one place.

Easy Discovery

Search by tool name or keywords. Find the right MCP tool for your bioinformatics workflow instantly.

GitHub-Linked

Point to your GitHub repo. The README is auto-fetched and rendered beautifully on your tool page.

Community Driven

Anyone can publish. Unique package names keep the registry clean. Built by bioinformaticians, for bioinformaticians.

How to use MCP tools

Go from zero to AI-powered bioinformatics in minutes.

1

Search for a tool

Browse AIBioAgentTools and find the bioinformatics MCP tool your workflow needs — from alignment to variant calling.

2

Add it to your config

Copy the package name and paste it into your claude_desktop_config.json to register the MCP server.

For example:

{
  "mcpServers": {
    "samtools-mcp": {
      "command": "npx",
      "args": ["-y", "samtools-mcp"]
    }
  }
}
3

Type your prompt

Open Claude and describe your task in plain language. No command syntax or flags required.

Align my paired-end FASTQ files to hg38 using BWA-MEM and report alignment statistics.
4

Wait for results

Claude calls the tool, runs the analysis, and returns the output directly in your conversation.

Tool called: bwa mem
Mapped reads: 98.4%
Output: aligned.bam

Ready to share your MCP tool?

Publishing takes less than a minute. Just point to your GitHub repo and we handle the rest.

Publish a Tool